ok
Mini Shell
import copy
import sys
import gc
import tempfile
import pytest
from os import path
from io import BytesIO
from itertools import chain
import numpy as np
from numpy.testing import (
assert_, assert_equal, IS_PYPY, assert_almost_equal,
assert_array_equal, assert_array_almost_equal, assert_raises,
assert_raises_regex, assert_warns, suppress_warnings,
_assert_valid_refcount, HAS_REFCOUNT, IS_PYSTON, IS_WASM
)
from numpy.testing._private.utils import _no_tracing, requires_memory
from numpy.compat import asbytes, asunicode, pickle
class TestRegression:
def test_invalid_round(self):
# Ticket #3
v = 4.7599999999999998
assert_array_equal(np.array([v]), np.array(v))
def test_mem_empty(self):
# Ticket #7
np.empty((1,), dtype=[('x', np.int64)])
def test_pickle_transposed(self):
# Ticket #16
a = np.transpose(np.array([[2, 9], [7, 0], [3, 8]]))
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
with BytesIO() as f:
pickle.dump(a, f, protocol=proto)
f.seek(0)
b = pickle.load(f)
assert_array_equal(a, b)
def test_dtype_names(self):
# Ticket #35
# Should succeed
np.dtype([(('name', 'label'), np.int32, 3)])
def test_reduce(self):
# Ticket #40
assert_almost_equal(np.add.reduce([1., .5], dtype=None), 1.5)
def test_zeros_order(self):
# Ticket #43
np.zeros([3], int, 'C')
np.zeros([3], order='C')
np.zeros([3], int, order='C')
def test_asarray_with_order(self):
# Check that nothing is done when order='F' and array C/F-contiguous
a = np.ones(2)
assert_(a is np.asarray(a, order='F'))
def test_ravel_with_order(self):
# Check that ravel works when order='F' and array C/F-contiguous
a = np.ones(2)
assert_(not a.ravel('F').flags.owndata)
def test_sort_bigendian(self):
# Ticket #47
a = np.linspace(0, 10, 11)
c = a.astype(np.dtype('<f8'))
c.sort()
assert_array_almost_equal(c, a)
def test_negative_nd_indexing(self):
# Ticket #49
c = np.arange(125).reshape((5, 5, 5))
origidx = np.array([-1, 0, 1])
idx = np.array(origidx)
c[idx]
assert_array_equal(idx, origidx)
def test_char_dump(self):
# Ticket #50
ca = np.char.array(np.arange(1000, 1010), itemsize=4)
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
with BytesIO() as f:
pickle.dump(ca, f, protocol=proto)
f.seek(0)
ca = np.load(f, allow_pickle=True)
def test_noncontiguous_fill(self):
# Ticket #58.
a = np.zeros((5, 3))
b = a[:, :2,]
def rs():
b.shape = (10,)
assert_raises(AttributeError, rs)
def test_bool(self):
# Ticket #60
np.bool_(1) # Should succeed
def test_indexing1(self):
# Ticket #64
descr = [('x', [('y', [('z', 'c16', (2,)),]),]),]
buffer = ((([6j, 4j],),),)
h = np.array(buffer, dtype=descr)
h['x']['y']['z']
def test_indexing2(self):
# Ticket #65
descr = [('x', 'i4', (2,))]
buffer = ([3, 2],)
h = np.array(buffer, dtype=descr)
h['x']
def test_round(self):
# Ticket #67
x = np.array([1+2j])
assert_almost_equal(x**(-1), [1/(1+2j)])
def test_scalar_compare(self):
# Trac Ticket #72
# https://github.com/numpy/numpy/issues/565
a = np.array(['test', 'auto'])
assert_array_equal(a == 'auto', np.array([False, True]))
assert_(a[1] == 'auto')
assert_(a[0] != 'auto')
b = np.linspace(0, 10, 11)
assert_array_equal(b != 'auto', np.ones(11, dtype=bool))
assert_(b[0] != 'auto')
def test_unicode_swapping(self):
# Ticket #79
ulen = 1
ucs_value = '\U0010FFFF'
ua = np.array([[[ucs_value*ulen]*2]*3]*4, dtype='U%s' % ulen)
ua.newbyteorder() # Should succeed.
def test_object_array_fill(self):
# Ticket #86
x = np.zeros(1, 'O')
x.fill([])
def test_mem_dtype_align(self):
# Ticket #93
assert_raises(TypeError, np.dtype,
{'names':['a'], 'formats':['foo']}, align=1)
def test_endian_bool_indexing(self):
# Ticket #105
a = np.arange(10., dtype='>f8')
b = np.arange(10., dtype='<f8')
xa = np.where((a > 2) & (a < 6))
xb = np.where((b > 2) & (b < 6))
ya = ((a > 2) & (a < 6))
yb = ((b > 2) & (b < 6))
assert_array_almost_equal(xa, ya.nonzero())
assert_array_almost_equal(xb, yb.nonzero())
assert_(np.all(a[ya] > 0.5))
assert_(np.all(b[yb] > 0.5))
def test_endian_where(self):
# GitHub issue #369
net = np.zeros(3, dtype='>f4')
net[1] = 0.00458849
net[2] = 0.605202
max_net = net.max()
test = np.where(net <= 0., max_net, net)
correct = np.array([ 0.60520202, 0.00458849, 0.60520202])
assert_array_almost_equal(test, correct)
def test_endian_recarray(self):
# Ticket #2185
dt = np.dtype([
('head', '>u4'),
('data', '>u4', 2),
])
buf = np.recarray(1, dtype=dt)
buf[0]['head'] = 1
buf[0]['data'][:] = [1, 1]
h = buf[0]['head']
d = buf[0]['data'][0]
buf[0]['head'] = h
buf[0]['data'][0] = d
assert_(buf[0]['head'] == 1)
def test_mem_dot(self):
# Ticket #106
x = np.random.randn(0, 1)
y = np.random.randn(10, 1)
# Dummy array to detect bad memory access:
_z = np.ones(10)
_dummy = np.empty((0, 10))
z = np.lib.stride_tricks.as_strided(_z, _dummy.shape, _dummy.strides)
np.dot(x, np.transpose(y), out=z)
assert_equal(_z, np.ones(10))
# Do the same for the built-in dot:
np.core.multiarray.dot(x, np.transpose(y), out=z)
assert_equal(_z, np.ones(10))
def test_arange_endian(self):
# Ticket #111
ref = np.arange(10)
x = np.arange(10, dtype='<f8')
assert_array_equal(ref, x)
x = np.arange(10, dtype='>f8')
assert_array_equal(ref, x)
def test_arange_inf_step(self):
ref = np.arange(0, 1, 10)
x = np.arange(0, 1, np.inf)
assert_array_equal(ref, x)
ref = np.arange(0, 1, -10)
x = np.arange(0, 1, -np.inf)
assert_array_equal(ref, x)
ref = np.arange(0, -1, -10)
x = np.arange(0, -1, -np.inf)
assert_array_equal(ref, x)
ref = np.arange(0, -1, 10)
x = np.arange(0, -1, np.inf)
assert_array_equal(ref, x)
def test_arange_underflow_stop_and_step(self):
finfo = np.finfo(np.float64)
ref = np.arange(0, finfo.eps, 2 * finfo.eps)
x = np.arange(0, finfo.eps, finfo.max)
assert_array_equal(ref, x)
ref = np.arange(0, finfo.eps, -2 * finfo.eps)
x = np.arange(0, finfo.eps, -finfo.max)
assert_array_equal(ref, x)
ref = np.arange(0, -finfo.eps, -2 * finfo.eps)
x = np.arange(0, -finfo.eps, -finfo.max)
assert_array_equal(ref, x)
ref = np.arange(0, -finfo.eps, 2 * finfo.eps)
x = np.arange(0, -finfo.eps, finfo.max)
assert_array_equal(ref, x)
def test_argmax(self):
# Ticket #119
a = np.random.normal(0, 1, (4, 5, 6, 7, 8))
for i in range(a.ndim):
a.argmax(i) # Should succeed
def test_mem_divmod(self):
# Ticket #126
for i in range(10):
divmod(np.array([i])[0], 10)
def test_hstack_invalid_dims(self):
# Ticket #128
x = np.arange(9).reshape((3, 3))
y = np.array([0, 0, 0])
assert_raises(ValueError, np.hstack, (x, y))
def test_squeeze_type(self):
# Ticket #133
a = np.array([3])
b = np.array(3)
assert_(type(a.squeeze()) is np.ndarray)
assert_(type(b.squeeze()) is np.ndarray)
def test_add_identity(self):
# Ticket #143
assert_equal(0, np.add.identity)
def test_numpy_float_python_long_addition(self):
# Check that numpy float and python longs can be added correctly.
a = np.float_(23.) + 2**135
assert_equal(a, 23. + 2**135)
def test_binary_repr_0(self):
# Ticket #151
assert_equal('0', np.binary_repr(0))
def test_rec_iterate(self):
# Ticket #160
descr = np.dtype([('i', int), ('f', float), ('s', '|S3')])
x = np.rec.array([(1, 1.1, '1.0'),
(2, 2.2, '2.0')], dtype=descr)
x[0].tolist()
[i for i in x[0]]
def test_unicode_string_comparison(self):
# Ticket #190
a = np.array('hello', np.str_)
b = np.array('world')
a == b
def test_tobytes_FORTRANORDER_discontiguous(self):
# Fix in r2836
# Create non-contiguous Fortran ordered array
x = np.array(np.random.rand(3, 3), order='F')[:, :2]
assert_array_almost_equal(x.ravel(), np.frombuffer(x.tobytes()))
def test_flat_assignment(self):
# Correct behaviour of ticket #194
x = np.empty((3, 1))
x.flat = np.arange(3)
assert_array_almost_equal(x, [[0], [1], [2]])
x.flat = np.arange(3, dtype=float)
assert_array_almost_equal(x, [[0], [1], [2]])
def test_broadcast_flat_assignment(self):
# Ticket #194
x = np.empty((3, 1))
def bfa():
x[:] = np.arange(3)
def bfb():
x[:] = np.arange(3, dtype=float)
assert_raises(ValueError, bfa)
assert_raises(ValueError, bfb)
@pytest.mark.xfail(IS_WASM, reason="not sure why")
@pytest.mark.parametrize("index",
[np.ones(10, dtype=bool), np.arange(10)],
ids=["boolean-arr-index", "integer-arr-index"])
def test_nonarray_assignment(self, index):
# See also Issue gh-2870, test for non-array assignment
# and equivalent unsafe casted array assignment
a = np.arange(10)
with pytest.raises(ValueError):
a[index] = np.nan
with np.errstate(invalid="warn"):
with pytest.warns(RuntimeWarning, match="invalid value"):
a[index] = np.array(np.nan) # Only warns
def test_unpickle_dtype_with_object(self):
# Implemented in r2840
dt = np.dtype([('x', int), ('y', np.object_), ('z', 'O')])
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
with BytesIO() as f:
pickle.dump(dt, f, protocol=proto)
f.seek(0)
dt_ = pickle.load(f)
assert_equal(dt, dt_)
def test_mem_array_creation_invalid_specification(self):
# Ticket #196
dt = np.dtype([('x', int), ('y', np.object_)])
# Wrong way
assert_raises(ValueError, np.array, [1, 'object'], dt)
# Correct way
np.array([(1, 'object')], dt)
def test_recarray_single_element(self):
# Ticket #202
a = np.array([1, 2, 3], dtype=np.int32)
b = a.copy()
r = np.rec.array(a, shape=1, formats=['3i4'], names=['d'])
assert_array_equal(a, b)
assert_equal(a, r[0][0])
def test_zero_sized_array_indexing(self):
# Ticket #205
tmp = np.array([])
def index_tmp():
tmp[np.array(10)]
assert_raises(IndexError, index_tmp)
def test_chararray_rstrip(self):
# Ticket #222
x = np.chararray((1,), 5)
x[0] = b'a '
x = x.rstrip()
assert_equal(x[0], b'a')
def test_object_array_shape(self):
# Ticket #239
assert_equal(np.array([[1, 2], 3, 4], dtype=object).shape, (3,))
assert_equal(np.array([[1, 2], [3, 4]], dtype=object).shape, (2, 2))
assert_equal(np.array([(1, 2), (3, 4)], dtype=object).shape, (2, 2))
assert_equal(np.array([], dtype=object).shape, (0,))
assert_equal(np.array([[], [], []], dtype=object).shape, (3, 0))
assert_equal(np.array([[3, 4], [5, 6], None], dtype=object).shape, (3,))
def test_mem_around(self):
# Ticket #243
x = np.zeros((1,))
y = [0]
decimal = 6
np.around(abs(x-y), decimal) <= 10.0**(-decimal)
def test_character_array_strip(self):
# Ticket #246
x = np.char.array(("x", "x ", "x "))
for c in x:
assert_equal(c, "x")
def test_lexsort(self):
# Lexsort memory error
v = np.array([1, 2, 3, 4, 5, 6, 7, 8, 9, 10])
assert_equal(np.lexsort(v), 0)
def test_lexsort_invalid_sequence(self):
# Issue gh-4123
class BuggySequence:
def __len__(self):
return 4
def __getitem__(self, key):
raise KeyError
assert_raises(KeyError, np.lexsort, BuggySequence())
def test_lexsort_zerolen_custom_strides(self):
# Ticket #14228
xs = np.array([], dtype='i8')
assert np.lexsort((xs,)).shape[0] == 0 # Works
xs.strides = (16,)
assert np.lexsort((xs,)).shape[0] == 0 # Was: MemoryError
def test_lexsort_zerolen_custom_strides_2d(self):
xs = np.array([], dtype='i8')
xs.shape = (0, 2)
xs.strides = (16, 16)
assert np.lexsort((xs,), axis=0).shape[0] == 0
xs.shape = (2, 0)
xs.strides = (16, 16)
assert np.lexsort((xs,), axis=0).shape[0] == 2
def test_lexsort_invalid_axis(self):
assert_raises(np.AxisError, np.lexsort, (np.arange(1),), axis=2)
assert_raises(np.AxisError, np.lexsort, (np.array([]),), axis=1)
assert_raises(np.AxisError, np.lexsort, (np.array(1),), axis=10)
def test_lexsort_zerolen_element(self):
dt = np.dtype([]) # a void dtype with no fields
xs = np.empty(4, dt)
assert np.lexsort((xs,)).shape[0] == xs.shape[0]
def test_pickle_py2_bytes_encoding(self):
# Check that arrays and scalars pickled on Py2 are
# unpickleable on Py3 using encoding='bytes'
test_data = [
# (original, py2_pickle)
(np.str_('\u6f2c'),
b"cnumpy.core.multiarray\nscalar\np0\n(cnumpy\ndtype\np1\n"
b"(S'U1'\np2\nI0\nI1\ntp3\nRp4\n(I3\nS'<'\np5\nNNNI4\nI4\n"
b"I0\ntp6\nbS',o\\x00\\x00'\np7\ntp8\nRp9\n."),
(np.array([9e123], dtype=np.float64),
b"cnumpy.core.multiarray\n_reconstruct\np0\n(cnumpy\nndarray\n"
b"p1\n(I0\ntp2\nS'b'\np3\ntp4\nRp5\n(I1\n(I1\ntp6\ncnumpy\ndtype\n"
b"p7\n(S'f8'\np8\nI0\nI1\ntp9\nRp10\n(I3\nS'<'\np11\nNNNI-1\nI-1\n"
b"I0\ntp12\nbI00\nS'O\\x81\\xb7Z\\xaa:\\xabY'\np13\ntp14\nb."),
(np.array([(9e123,)], dtype=[('name', float)]),
b"cnumpy.core.multiarray\n_reconstruct\np0\n(cnumpy\nndarray\np1\n"
b"(I0\ntp2\nS'b'\np3\ntp4\nRp5\n(I1\n(I1\ntp6\ncnumpy\ndtype\np7\n"
b"(S'V8'\np8\nI0\nI1\ntp9\nRp10\n(I3\nS'|'\np11\nN(S'name'\np12\ntp13\n"
b"(dp14\ng12\n(g7\n(S'f8'\np15\nI0\nI1\ntp16\nRp17\n(I3\nS'<'\np18\nNNNI-1\n"
b"I-1\nI0\ntp19\nbI0\ntp20\nsI8\nI1\nI0\ntp21\n"
b"bI00\nS'O\\x81\\xb7Z\\xaa:\\xabY'\np22\ntp23\nb."),
]
for original, data in test_data:
result = pickle.loads(data, encoding='bytes')
assert_equal(result, original)
if isinstance(result, np.ndarray) and result.dtype.names is not None:
for name in result.dtype.names:
assert_(isinstance(name, str))
def test_pickle_dtype(self):
# Ticket #251
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
pickle.dumps(float, protocol=proto)
def test_swap_real(self):
# Ticket #265
assert_equal(np.arange(4, dtype='>c8').imag.max(), 0.0)
assert_equal(np.arange(4, dtype='<c8').imag.max(), 0.0)
assert_equal(np.arange(4, dtype='>c8').real.max(), 3.0)
assert_equal(np.arange(4, dtype='<c8').real.max(), 3.0)
def test_object_array_from_list(self):
# Ticket #270 (gh-868)
assert_(np.array([1, None, 'A']).shape == (3,))
def test_multiple_assign(self):
# Ticket #273
a = np.zeros((3, 1), int)
a[[1, 2]] = 1
def test_empty_array_type(self):
assert_equal(np.array([]).dtype, np.zeros(0).dtype)
def test_void_copyswap(self):
dt = np.dtype([('one', '<i4'), ('two', '<i4')])
x = np.array((1, 2), dtype=dt)
x = x.byteswap()
assert_(x['one'] > 1 and x['two'] > 2)
def test_method_args(self):
# Make sure methods and functions have same default axis
# keyword and arguments
funcs1 = ['argmax', 'argmin', 'sum', 'any', 'all', 'cumsum',
'ptp', 'cumprod', 'prod', 'std', 'var', 'mean',
'round', 'min', 'max', 'argsort', 'sort']
funcs2 = ['compress', 'take', 'repeat']
for func in funcs1:
arr = np.random.rand(8, 7)
arr2 = arr.copy()
res1 = getattr(arr, func)()
res2 = getattr(np, func)(arr2)
if res1 is None:
res1 = arr
if res1.dtype.kind in 'uib':
assert_((res1 == res2).all(), func)
else:
assert_(abs(res1-res2).max() < 1e-8, func)
for func in funcs2:
arr1 = np.random.rand(8, 7)
arr2 = np.random.rand(8, 7)
res1 = None
if func == 'compress':
arr1 = arr1.ravel()
res1 = getattr(arr2, func)(arr1)
else:
arr2 = (15*arr2).astype(int).ravel()
if res1 is None:
res1 = getattr(arr1, func)(arr2)
res2 = getattr(np, func)(arr1, arr2)
assert_(abs(res1-res2).max() < 1e-8, func)
def test_mem_lexsort_strings(self):
# Ticket #298
lst = ['abc', 'cde', 'fgh']
np.lexsort((lst,))
def test_fancy_index(self):
# Ticket #302
x = np.array([1, 2])[np.array([0])]
assert_equal(x.shape, (1,))
def test_recarray_copy(self):
# Ticket #312
dt = [('x', np.int16), ('y', np.float64)]
ra = np.array([(1, 2.3)], dtype=dt)
rb = np.rec.array(ra, dtype=dt)
rb['x'] = 2.
assert_(ra['x'] != rb['x'])
def test_rec_fromarray(self):
# Ticket #322
x1 = np.array([[1, 2], [3, 4], [5, 6]])
x2 = np.array(['a', 'dd', 'xyz'])
x3 = np.array([1.1, 2, 3])
np.rec.fromarrays([x1, x2, x3], formats="(2,)i4,a3,f8")
def test_object_array_assign(self):
x = np.empty((2, 2), object)
x.flat[2] = (1, 2, 3)
assert_equal(x.flat[2], (1, 2, 3))
def test_ndmin_float64(self):
# Ticket #324
x = np.array([1, 2, 3], dtype=np.float64)
assert_equal(np.array(x, dtype=np.float32, ndmin=2).ndim, 2)
assert_equal(np.array(x, dtype=np.float64, ndmin=2).ndim, 2)
def test_ndmin_order(self):
# Issue #465 and related checks
assert_(np.array([1, 2], order='C', ndmin=3).flags.c_contiguous)
assert_(np.array([1, 2], order='F', ndmin=3).flags.f_contiguous)
assert_(np.array(np.ones((2, 2), order='F'), ndmin=3).flags.f_contiguous)
assert_(np.array(np.ones((2, 2), order='C'), ndmin=3).flags.c_contiguous)
def test_mem_axis_minimization(self):
# Ticket #327
data = np.arange(5)
data = np.add.outer(data, data)
def test_mem_float_imag(self):
# Ticket #330
np.float64(1.0).imag
def test_dtype_tuple(self):
# Ticket #334
assert_(np.dtype('i4') == np.dtype(('i4', ())))
def test_dtype_posttuple(self):
# Ticket #335
np.dtype([('col1', '()i4')])
def test_numeric_carray_compare(self):
# Ticket #341
assert_equal(np.array(['X'], 'c'), b'X')
def test_string_array_size(self):
# Ticket #342
assert_raises(ValueError,
np.array, [['X'], ['X', 'X', 'X']], '|S1')
def test_dtype_repr(self):
# Ticket #344
dt1 = np.dtype(('uint32', 2))
dt2 = np.dtype(('uint32', (2,)))
assert_equal(dt1.__repr__(), dt2.__repr__())
def test_reshape_order(self):
# Make sure reshape order works.
a = np.arange(6).reshape(2, 3, order='F')
assert_equal(a, [[0, 2, 4], [1, 3, 5]])
a = np.array([[1, 2], [3, 4], [5, 6], [7, 8]])
b = a[:, 1]
assert_equal(b.reshape(2, 2, order='F'), [[2, 6], [4, 8]])
def test_reshape_zero_strides(self):
# Issue #380, test reshaping of zero strided arrays
a = np.ones(1)
a = np.lib.stride_tricks.as_strided(a, shape=(5,), strides=(0,))
assert_(a.reshape(5, 1).strides[0] == 0)
def test_reshape_zero_size(self):
# GitHub Issue #2700, setting shape failed for 0-sized arrays
a = np.ones((0, 2))
a.shape = (-1, 2)
# Cannot test if NPY_RELAXED_STRIDES_DEBUG changes the strides.
# With NPY_RELAXED_STRIDES_DEBUG the test becomes superfluous.
@pytest.mark.skipif(np.ones(1).strides[0] == np.iinfo(np.intp).max,
reason="Using relaxed stride debug")
def test_reshape_trailing_ones_strides(self):
# GitHub issue gh-2949, bad strides for trailing ones of new shape
a = np.zeros(12, dtype=np.int32)[::2] # not contiguous
strides_c = (16, 8, 8, 8)
strides_f = (8, 24, 48, 48)
assert_equal(a.reshape(3, 2, 1, 1).strides, strides_c)
assert_equal(a.reshape(3, 2, 1, 1, order='F').strides, strides_f)
assert_equal(np.array(0, dtype=np.int32).reshape(1, 1).strides, (4, 4))
def test_repeat_discont(self):
# Ticket #352
a = np.arange(12).reshape(4, 3)[:, 2]
assert_equal(a.repeat(3), [2, 2, 2, 5, 5, 5, 8, 8, 8, 11, 11, 11])
def test_array_index(self):
# Make sure optimization is not called in this case.
a = np.array([1, 2, 3])
a2 = np.array([[1, 2, 3]])
assert_equal(a[np.where(a == 3)], a2[np.where(a2 == 3)])
def test_object_argmax(self):
a = np.array([1, 2, 3], dtype=object)
assert_(a.argmax() == 2)
def test_recarray_fields(self):
# Ticket #372
dt0 = np.dtype([('f0', 'i4'), ('f1', 'i4')])
dt1 = np.dtype([('f0', 'i8'), ('f1', 'i8')])
for a in [np.array([(1, 2), (3, 4)], "i4,i4"),
np.rec.array([(1, 2), (3, 4)], "i4,i4"),
np.rec.array([(1, 2), (3, 4)]),
np.rec.fromarrays([(1, 2), (3, 4)], "i4,i4"),
np.rec.fromarrays([(1, 2), (3, 4)])]:
assert_(a.dtype in [dt0, dt1])
def test_random_shuffle(self):
# Ticket #374
a = np.arange(5).reshape((5, 1))
b = a.copy()
np.random.shuffle(b)
assert_equal(np.sort(b, axis=0), a)
def test_refcount_vdot(self):
# Changeset #3443
_assert_valid_refcount(np.vdot)
def test_startswith(self):
ca = np.char.array(['Hi', 'There'])
assert_equal(ca.startswith('H'), [True, False])
def test_noncommutative_reduce_accumulate(self):
# Ticket #413
tosubtract = np.arange(5)
todivide = np.array([2.0, 0.5, 0.25])
assert_equal(np.subtract.reduce(tosubtract), -10)
assert_equal(np.divide.reduce(todivide), 16.0)
assert_array_equal(np.subtract.accumulate(tosubtract),
np.array([0, -1, -3, -6, -10]))
assert_array_equal(np.divide.accumulate(todivide),
np.array([2., 4., 16.]))
def test_convolve_empty(self):
# Convolve should raise an error for empty input array.
assert_raises(ValueError, np.convolve, [], [1])
assert_raises(ValueError, np.convolve, [1], [])
def test_multidim_byteswap(self):
# Ticket #449
r = np.array([(1, (0, 1, 2))], dtype="i2,3i2")
assert_array_equal(r.byteswap(),
np.array([(256, (0, 256, 512))], r.dtype))
def test_string_NULL(self):
# Changeset 3557
assert_equal(np.array("a\x00\x0b\x0c\x00").item(),
'a\x00\x0b\x0c')
def test_junk_in_string_fields_of_recarray(self):
# Ticket #483
r = np.array([[b'abc']], dtype=[('var1', '|S20')])
assert_(asbytes(r['var1'][0][0]) == b'abc')
def test_take_output(self):
# Ensure that 'take' honours output parameter.
x = np.arange(12).reshape((3, 4))
a = np.take(x, [0, 2], axis=1)
b = np.zeros_like(a)
np.take(x, [0, 2], axis=1, out=b)
assert_array_equal(a, b)
def test_take_object_fail(self):
# Issue gh-3001
d = 123.
a = np.array([d, 1], dtype=object)
if HAS_REFCOUNT:
ref_d = sys.getrefcount(d)
try:
a.take([0, 100])
except IndexError:
pass
if HAS_REFCOUNT:
assert_(ref_d == sys.getrefcount(d))
def test_array_str_64bit(self):
# Ticket #501
s = np.array([1, np.nan], dtype=np.float64)
with np.errstate(all='raise'):
np.array_str(s) # Should succeed
def test_frompyfunc_endian(self):
# Ticket #503
from math import radians
uradians = np.frompyfunc(radians, 1, 1)
big_endian = np.array([83.4, 83.5], dtype='>f8')
little_endian = np.array([83.4, 83.5], dtype='<f8')
assert_almost_equal(uradians(big_endian).astype(float),
uradians(little_endian).astype(float))
def test_mem_string_arr(self):
# Ticket #514
s = "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
t = []
np.hstack((t, s))
def test_arr_transpose(self):
# Ticket #516
x = np.random.rand(*(2,)*16)
x.transpose(list(range(16))) # Should succeed
def test_string_mergesort(self):
# Ticket #540
x = np.array(['a']*32)
assert_array_equal(x.argsort(kind='m'), np.arange(32))
def test_argmax_byteorder(self):
# Ticket #546
a = np.arange(3, dtype='>f')
assert_(a[a.argmax()] == a.max())
def test_rand_seed(self):
# Ticket #555
for l in np.arange(4):
np.random.seed(l)
def test_mem_deallocation_leak(self):
# Ticket #562
a = np.zeros(5, dtype=float)
b = np.array(a, dtype=float)
del a, b
def test_mem_on_invalid_dtype(self):
"Ticket #583"
assert_raises(ValueError, np.fromiter, [['12', ''], ['13', '']], str)
def test_dot_negative_stride(self):
# Ticket #588
x = np.array([[1, 5, 25, 125., 625]])
y = np.array([[20.], [160.], [640.], [1280.], [1024.]])
z = y[::-1].copy()
y2 = y[::-1]
assert_equal(np.dot(x, z), np.dot(x, y2))
def test_object_casting(self):
# This used to trigger the object-type version of
# the bitwise_or operation, because float64 -> object
# casting succeeds
def rs():
x = np.ones([484, 286])
y = np.zeros([484, 286])
x |= y
assert_raises(TypeError, rs)
def test_unicode_scalar(self):
# Ticket #600
x = np.array(["DROND", "DROND1"], dtype="U6")
el = x[1]
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
new = pickle.loads(pickle.dumps(el, protocol=proto))
assert_equal(new, el)
def test_arange_non_native_dtype(self):
# Ticket #616
for T in ('>f4', '<f4'):
dt = np.dtype(T)
assert_equal(np.arange(0, dtype=dt).dtype, dt)
assert_equal(np.arange(0.5, dtype=dt).dtype, dt)
assert_equal(np.arange(5, dtype=dt).dtype, dt)
def test_bool_flat_indexing_invalid_nr_elements(self):
s = np.ones(10, dtype=float)
x = np.array((15,), dtype=float)
def ia(x, s, v):
x[(s > 0)] = v
assert_raises(IndexError, ia, x, s, np.zeros(9, dtype=float))
assert_raises(IndexError, ia, x, s, np.zeros(11, dtype=float))
# Old special case (different code path):
assert_raises(ValueError, ia, x.flat, s, np.zeros(9, dtype=float))
assert_raises(ValueError, ia, x.flat, s, np.zeros(11, dtype=float))
def test_mem_scalar_indexing(self):
# Ticket #603
x = np.array([0], dtype=float)
index = np.array(0, dtype=np.int32)
x[index]
def test_binary_repr_0_width(self):
assert_equal(np.binary_repr(0, width=3), '000')
def test_fromstring(self):
assert_equal(np.fromstring("12:09:09", dtype=int, sep=":"),
[12, 9, 9])
def test_searchsorted_variable_length(self):
x = np.array(['a', 'aa', 'b'])
y = np.array(['d', 'e'])
assert_equal(x.searchsorted(y), [3, 3])
def test_string_argsort_with_zeros(self):
# Check argsort for strings containing zeros.
x = np.frombuffer(b"\x00\x02\x00\x01", dtype="|S2")
assert_array_equal(x.argsort(kind='m'), np.array([1, 0]))
assert_array_equal(x.argsort(kind='q'), np.array([1, 0]))
def test_string_sort_with_zeros(self):
# Check sort for strings containing zeros.
x = np.frombuffer(b"\x00\x02\x00\x01", dtype="|S2")
y = np.frombuffer(b"\x00\x01\x00\x02", dtype="|S2")
assert_array_equal(np.sort(x, kind="q"), y)
def test_copy_detection_zero_dim(self):
# Ticket #658
np.indices((0, 3, 4)).T.reshape(-1, 3)
def test_flat_byteorder(self):
# Ticket #657
x = np.arange(10)
assert_array_equal(x.astype('>i4'), x.astype('<i4').flat[:])
assert_array_equal(x.astype('>i4').flat[:], x.astype('<i4'))
def test_sign_bit(self):
x = np.array([0, -0.0, 0])
assert_equal(str(np.abs(x)), '[0. 0. 0.]')
def test_flat_index_byteswap(self):
for dt in (np.dtype('<i4'), np.dtype('>i4')):
x = np.array([-1, 0, 1], dtype=dt)
assert_equal(x.flat[0].dtype, x[0].dtype)
def test_copy_detection_corner_case(self):
# Ticket #658
np.indices((0, 3, 4)).T.reshape(-1, 3)
# Cannot test if NPY_RELAXED_STRIDES_DEBUG changes the strides.
# With NPY_RELAXED_STRIDES_DEBUG the test becomes superfluous,
# 0-sized reshape itself is tested elsewhere.
@pytest.mark.skipif(np.ones(1).strides[0] == np.iinfo(np.intp).max,
reason="Using relaxed stride debug")
def test_copy_detection_corner_case2(self):
# Ticket #771: strides are not set correctly when reshaping 0-sized
# arrays
b = np.indices((0, 3, 4)).T.reshape(-1, 3)
assert_equal(b.strides, (3 * b.itemsize, b.itemsize))
def test_object_array_refcounting(self):
# Ticket #633
if not hasattr(sys, 'getrefcount'):
return
# NB. this is probably CPython-specific
cnt = sys.getrefcount
a = object()
b = object()
c = object()
cnt0_a = cnt(a)
cnt0_b = cnt(b)
cnt0_c = cnt(c)
# -- 0d -> 1-d broadcast slice assignment
arr = np.zeros(5, dtype=np.object_)
arr[:] = a
assert_equal(cnt(a), cnt0_a + 5)
arr[:] = b
assert_equal(cnt(a), cnt0_a)
assert_equal(cnt(b), cnt0_b + 5)
arr[:2] = c
assert_equal(cnt(b), cnt0_b + 3)
assert_equal(cnt(c), cnt0_c + 2)
del arr
# -- 1-d -> 2-d broadcast slice assignment
arr = np.zeros((5, 2), dtype=np.object_)
arr0 = np.zeros(2, dtype=np.object_)
arr0[0] = a
assert_(cnt(a) == cnt0_a + 1)
arr0[1] = b
assert_(cnt(b) == cnt0_b + 1)
arr[:, :] = arr0
assert_(cnt(a) == cnt0_a + 6)
assert_(cnt(b) == cnt0_b + 6)
arr[:, 0] = None
assert_(cnt(a) == cnt0_a + 1)
del arr, arr0
# -- 2-d copying + flattening
arr = np.zeros((5, 2), dtype=np.object_)
arr[:, 0] = a
arr[:, 1] = b
assert_(cnt(a) == cnt0_a + 5)
assert_(cnt(b) == cnt0_b + 5)
arr2 = arr.copy()
assert_(cnt(a) == cnt0_a + 10)
assert_(cnt(b) == cnt0_b + 10)
arr2 = arr[:, 0].copy()
assert_(cnt(a) == cnt0_a + 10)
assert_(cnt(b) == cnt0_b + 5)
arr2 = arr.flatten()
assert_(cnt(a) == cnt0_a + 10)
assert_(cnt(b) == cnt0_b + 10)
del arr, arr2
# -- concatenate, repeat, take, choose
arr1 = np.zeros((5, 1), dtype=np.object_)
arr2 = np.zeros((5, 1), dtype=np.object_)
arr1[...] = a
arr2[...] = b
assert_(cnt(a) == cnt0_a + 5)
assert_(cnt(b) == cnt0_b + 5)
tmp = np.concatenate((arr1, arr2))
assert_(cnt(a) == cnt0_a + 5 + 5)
assert_(cnt(b) == cnt0_b + 5 + 5)
tmp = arr1.repeat(3, axis=0)
assert_(cnt(a) == cnt0_a + 5 + 3*5)
tmp = arr1.take([1, 2, 3], axis=0)
assert_(cnt(a) == cnt0_a + 5 + 3)
x = np.array([[0], [1], [0], [1], [1]], int)
tmp = x.choose(arr1, arr2)
assert_(cnt(a) == cnt0_a + 5 + 2)
assert_(cnt(b) == cnt0_b + 5 + 3)
del tmp # Avoid pyflakes unused variable warning
def test_mem_custom_float_to_array(self):
# Ticket 702
class MyFloat:
def __float__(self):
return 1.0
tmp = np.atleast_1d([MyFloat()])
tmp.astype(float) # Should succeed
def test_object_array_refcount_self_assign(self):
# Ticket #711
class VictimObject:
deleted = False
def __del__(self):
self.deleted = True
d = VictimObject()
arr = np.zeros(5, dtype=np.object_)
arr[:] = d
del d
arr[:] = arr # refcount of 'd' might hit zero here
assert_(not arr[0].deleted)
arr[:] = arr # trying to induce a segfault by doing it again...
assert_(not arr[0].deleted)
def test_mem_fromiter_invalid_dtype_string(self):
x = [1, 2, 3]
assert_raises(ValueError,
np.fromiter, [xi for xi in x], dtype='S')
def test_reduce_big_object_array(self):
# Ticket #713
oldsize = np.setbufsize(10*16)
a = np.array([None]*161, object)
assert_(not np.any(a))
np.setbufsize(oldsize)
def test_mem_0d_array_index(self):
# Ticket #714
np.zeros(10)[np.array(0)]
def test_nonnative_endian_fill(self):
# Non-native endian arrays were incorrectly filled with scalars
# before r5034.
if sys.byteorder == 'little':
dtype = np.dtype('>i4')
else:
dtype = np.dtype('<i4')
x = np.empty([1], dtype=dtype)
x.fill(1)
assert_equal(x, np.array([1], dtype=dtype))
def test_dot_alignment_sse2(self):
# Test for ticket #551, changeset r5140
x = np.zeros((30, 40))
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
y = pickle.loads(pickle.dumps(x, protocol=proto))
# y is now typically not aligned on a 8-byte boundary
z = np.ones((1, y.shape[0]))
# This shouldn't cause a segmentation fault:
np.dot(z, y)
def test_astype_copy(self):
# Ticket #788, changeset r5155
# The test data file was generated by scipy.io.savemat.
# The dtype is float64, but the isbuiltin attribute is 0.
data_dir = path.join(path.dirname(__file__), 'data')
filename = path.join(data_dir, "astype_copy.pkl")
with open(filename, 'rb') as f:
xp = pickle.load(f, encoding='latin1')
xpd = xp.astype(np.float64)
assert_((xp.__array_interface__['data'][0] !=
xpd.__array_interface__['data'][0]))
def test_compress_small_type(self):
# Ticket #789, changeset 5217.
# compress with out argument segfaulted if cannot cast safely
import numpy as np
a = np.array([[1, 2], [3, 4]])
b = np.zeros((2, 1), dtype=np.single)
try:
a.compress([True, False], axis=1, out=b)
raise AssertionError("compress with an out which cannot be "
"safely casted should not return "
"successfully")
except TypeError:
pass
def test_attributes(self):
# Ticket #791
class TestArray(np.ndarray):
def __new__(cls, data, info):
result = np.array(data)
result = result.view(cls)
result.info = info
return result
def __array_finalize__(self, obj):
self.info = getattr(obj, 'info', '')
dat = TestArray([[1, 2, 3, 4], [5, 6, 7, 8]], 'jubba')
assert_(dat.info == 'jubba')
dat.resize((4, 2))
assert_(dat.info == 'jubba')
dat.sort()
assert_(dat.info == 'jubba')
dat.fill(2)
assert_(dat.info == 'jubba')
dat.put([2, 3, 4], [6, 3, 4])
assert_(dat.info == 'jubba')
dat.setfield(4, np.int32, 0)
assert_(dat.info == 'jubba')
dat.setflags()
assert_(dat.info == 'jubba')
assert_(dat.all(1).info == 'jubba')
assert_(dat.any(1).info == 'jubba')
assert_(dat.argmax(1).info == 'jubba')
assert_(dat.argmin(1).info == 'jubba')
assert_(dat.argsort(1).info == 'jubba')
assert_(dat.astype(TestArray).info == 'jubba')
assert_(dat.byteswap().info == 'jubba')
assert_(dat.clip(2, 7).info == 'jubba')
assert_(dat.compress([0, 1, 1]).info == 'jubba')
assert_(dat.conj().info == 'jubba')
assert_(dat.conjugate().info == 'jubba')
assert_(dat.copy().info == 'jubba')
dat2 = TestArray([2, 3, 1, 0], 'jubba')
choices = [[0, 1, 2, 3], [10, 11, 12, 13],
[20, 21, 22, 23], [30, 31, 32, 33]]
assert_(dat2.choose(choices).info == 'jubba')
assert_(dat.cumprod(1).info == 'jubba')
assert_(dat.cumsum(1).info == 'jubba')
assert_(dat.diagonal().info == 'jubba')
assert_(dat.flatten().info == 'jubba')
assert_(dat.getfield(np.int32, 0).info == 'jubba')
assert_(dat.imag.info == 'jubba')
assert_(dat.max(1).info == 'jubba')
assert_(dat.mean(1).info == 'jubba')
assert_(dat.min(1).info == 'jubba')
assert_(dat.newbyteorder().info == 'jubba')
assert_(dat.prod(1).info == 'jubba')
assert_(dat.ptp(1).info == 'jubba')
assert_(dat.ravel().info == 'jubba')
assert_(dat.real.info == 'jubba')
assert_(dat.repeat(2).info == 'jubba')
assert_(dat.reshape((2, 4)).info == 'jubba')
assert_(dat.round().info == 'jubba')
assert_(dat.squeeze().info == 'jubba')
assert_(dat.std(1).info == 'jubba')
assert_(dat.sum(1).info == 'jubba')
assert_(dat.swapaxes(0, 1).info == 'jubba')
assert_(dat.take([2, 3, 5]).info == 'jubba')
assert_(dat.transpose().info == 'jubba')
assert_(dat.T.info == 'jubba')
assert_(dat.var(1).info == 'jubba')
assert_(dat.view(TestArray).info == 'jubba')
# These methods do not preserve subclasses
assert_(type(dat.nonzero()[0]) is np.ndarray)
assert_(type(dat.nonzero()[1]) is np.ndarray)
def test_recarray_tolist(self):
# Ticket #793, changeset r5215
# Comparisons fail for NaN, so we can't use random memory
# for the test.
buf = np.zeros(40, dtype=np.int8)
a = np.recarray(2, formats="i4,f8,f8", names="id,x,y", buf=buf)
b = a.tolist()
assert_( a[0].tolist() == b[0])
assert_( a[1].tolist() == b[1])
def test_nonscalar_item_method(self):
# Make sure that .item() fails graciously when it should
a = np.arange(5)
assert_raises(ValueError, a.item)
def test_char_array_creation(self):
a = np.array('123', dtype='c')
b = np.array([b'1', b'2', b'3'])
assert_equal(a, b)
def test_unaligned_unicode_access(self):
# Ticket #825
for i in range(1, 9):
msg = 'unicode offset: %d chars' % i
t = np.dtype([('a', 'S%d' % i), ('b', 'U2')])
x = np.array([(b'a', 'b')], dtype=t)
assert_equal(str(x), "[(b'a', 'b')]", err_msg=msg)
def test_sign_for_complex_nan(self):
# Ticket 794.
with np.errstate(invalid='ignore'):
C = np.array([-np.inf, -2+1j, 0, 2-1j, np.inf, np.nan])
have = np.sign(C)
want = np.array([-1+0j, -1+0j, 0+0j, 1+0j, 1+0j, np.nan])
assert_equal(have, want)
def test_for_equal_names(self):
# Ticket #674
dt = np.dtype([('foo', float), ('bar', float)])
a = np.zeros(10, dt)
b = list(a.dtype.names)
b[0] = "notfoo"
a.dtype.names = b
assert_(a.dtype.names[0] == "notfoo")
assert_(a.dtype.names[1] == "bar")
def test_for_object_scalar_creation(self):
# Ticket #816
a = np.object_()
b = np.object_(3)
b2 = np.object_(3.0)
c = np.object_([4, 5])
d = np.object_([None, {}, []])
assert_(a is None)
assert_(type(b) is int)
assert_(type(b2) is float)
assert_(type(c) is np.ndarray)
assert_(c.dtype == object)
assert_(d.dtype == object)
def test_array_resize_method_system_error(self):
# Ticket #840 - order should be an invalid keyword.
x = np.array([[0, 1], [2, 3]])
assert_raises(TypeError, x.resize, (2, 2), order='C')
def test_for_zero_length_in_choose(self):
"Ticket #882"
a = np.array(1)
assert_raises(ValueError, lambda x: x.choose([]), a)
def test_array_ndmin_overflow(self):
"Ticket #947."
assert_raises(ValueError, lambda: np.array([1], ndmin=33))
def test_void_scalar_with_titles(self):
# No ticket
data = [('john', 4), ('mary', 5)]
dtype1 = [(('source:yy', 'name'), 'O'), (('source:xx', 'id'), int)]
arr = np.array(data, dtype=dtype1)
assert_(arr[0][0] == 'john')
assert_(arr[0][1] == 4)
def test_void_scalar_constructor(self):
#Issue #1550
#Create test string data, construct void scalar from data and assert
#that void scalar contains original data.
test_string = np.array("test")
test_string_void_scalar = np.core.multiarray.scalar(
np.dtype(("V", test_string.dtype.itemsize)), test_string.tobytes())
assert_(test_string_void_scalar.view(test_string.dtype) == test_string)
#Create record scalar, construct from data and assert that
#reconstructed scalar is correct.
test_record = np.ones((), "i,i")
test_record_void_scalar = np.core.multiarray.scalar(
test_record.dtype, test_record.tobytes())
assert_(test_record_void_scalar == test_record)
# Test pickle and unpickle of void and record scalars
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
assert_(pickle.loads(
pickle.dumps(test_string, protocol=proto)) == test_string)
assert_(pickle.loads(
pickle.dumps(test_record, protocol=proto)) == test_record)
@_no_tracing
def test_blasdot_uninitialized_memory(self):
# Ticket #950
for m in [0, 1, 2]:
for n in [0, 1, 2]:
for k in range(3):
# Try to ensure that x->data contains non-zero floats
x = np.array([123456789e199], dtype=np.float64)
if IS_PYPY:
x.resize((m, 0), refcheck=False)
else:
x.resize((m, 0))
y = np.array([123456789e199], dtype=np.float64)
if IS_PYPY:
y.resize((0, n), refcheck=False)
else:
y.resize((0, n))
# `dot` should just return zero (m, n) matrix
z = np.dot(x, y)
assert_(np.all(z == 0))
assert_(z.shape == (m, n))
def test_zeros(self):
# Regression test for #1061.
# Set a size which cannot fit into a 64 bits signed integer
sz = 2 ** 64
with assert_raises_regex(ValueError,
'Maximum allowed dimension exceeded'):
np.empty(sz)
def test_huge_arange(self):
# Regression test for #1062.
# Set a size which cannot fit into a 64 bits signed integer
sz = 2 ** 64
with assert_raises_regex(ValueError,
'Maximum allowed size exceeded'):
np.arange(sz)
assert_(np.size == sz)
def test_fromiter_bytes(self):
# Ticket #1058
a = np.fromiter(list(range(10)), dtype='b')
b = np.fromiter(list(range(10)), dtype='B')
assert_(np.all(a == np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])))
assert_(np.all(b == np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])))
def test_array_from_sequence_scalar_array(self):
# Ticket #1078: segfaults when creating an array with a sequence of
# 0d arrays.
a = np.array((np.ones(2), np.array(2)), dtype=object)
assert_equal(a.shape, (2,))
assert_equal(a.dtype, np.dtype(object))
assert_equal(a[0], np.ones(2))
assert_equal(a[1], np.array(2))
a = np.array(((1,), np.array(1)), dtype=object)
assert_equal(a.shape, (2,))
assert_equal(a.dtype, np.dtype(object))
assert_equal(a[0], (1,))
assert_equal(a[1], np.array(1))
def test_array_from_sequence_scalar_array2(self):
# Ticket #1081: weird array with strange input...
t = np.array([np.array([]), np.array(0, object)], dtype=object)
assert_equal(t.shape, (2,))
assert_equal(t.dtype, np.dtype(object))
def test_array_too_big(self):
# Ticket #1080.
assert_raises(ValueError, np.zeros, [975]*7, np.int8)
assert_raises(ValueError, np.zeros, [26244]*5, np.int8)
def test_dtype_keyerrors_(self):
# Ticket #1106.
dt = np.dtype([('f1', np.uint)])
assert_raises(KeyError, dt.__getitem__, "f2")
assert_raises(IndexError, dt.__getitem__, 1)
assert_raises(TypeError, dt.__getitem__, 0.0)
def test_lexsort_buffer_length(self):
# Ticket #1217, don't segfault.
a = np.ones(100, dtype=np.int8)
b = np.ones(100, dtype=np.int32)
i = np.lexsort((a[::-1], b))
assert_equal(i, np.arange(100, dtype=int))
def test_object_array_to_fixed_string(self):
# Ticket #1235.
a = np.array(['abcdefgh', 'ijklmnop'], dtype=np.object_)
b = np.array(a, dtype=(np.str_, 8))
assert_equal(a, b)
c = np.array(a, dtype=(np.str_, 5))
assert_equal(c, np.array(['abcde', 'ijklm']))
d = np.array(a, dtype=(np.str_, 12))
assert_equal(a, d)
e = np.empty((2, ), dtype=(np.str_, 8))
e[:] = a[:]
assert_equal(a, e)
def test_unicode_to_string_cast(self):
# Ticket #1240.
a = np.array([['abc', '\u03a3'],
['asdf', 'erw']],
dtype='U')
assert_raises(UnicodeEncodeError, np.array, a, 'S4')
def test_unicode_to_string_cast_error(self):
# gh-15790
a = np.array(['\x80'] * 129, dtype='U3')
assert_raises(UnicodeEncodeError, np.array, a, 'S')
b = a.reshape(3, 43)[:-1, :-1]
assert_raises(UnicodeEncodeError, np.array, b, 'S')
def test_mixed_string_byte_array_creation(self):
a = np.array(['1234', b'123'])
assert_(a.itemsize == 16)
a = np.array([b'123', '1234'])
assert_(a.itemsize == 16)
a = np.array(['1234', b'123', '12345'])
assert_(a.itemsize == 20)
a = np.array([b'123', '1234', b'12345'])
assert_(a.itemsize == 20)
a = np.array([b'123', '1234', b'1234'])
assert_(a.itemsize == 16)
def test_misaligned_objects_segfault(self):
# Ticket #1198 and #1267
a1 = np.zeros((10,), dtype='O,c')
a2 = np.array(['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j'], 'S10')
a1['f0'] = a2
repr(a1)
np.argmax(a1['f0'])
a1['f0'][1] = "FOO"
a1['f0'] = "FOO"
np.array(a1['f0'], dtype='S')
np.nonzero(a1['f0'])
a1.sort()
copy.deepcopy(a1)
def test_misaligned_scalars_segfault(self):
# Ticket #1267
s1 = np.array(('a', 'Foo'), dtype='c,O')
s2 = np.array(('b', 'Bar'), dtype='c,O')
s1['f1'] = s2['f1']
s1['f1'] = 'Baz'
def test_misaligned_dot_product_objects(self):
# Ticket #1267
# This didn't require a fix, but it's worth testing anyway, because
# it may fail if .dot stops enforcing the arrays to be BEHAVED
a = np.array([[(1, 'a'), (0, 'a')], [(0, 'a'), (1, 'a')]], dtype='O,c')
b = np.array([[(4, 'a'), (1, 'a')], [(2, 'a'), (2, 'a')]], dtype='O,c')
np.dot(a['f0'], b['f0'])
def test_byteswap_complex_scalar(self):
# Ticket #1259 and gh-441
for dtype in [np.dtype('<'+t) for t in np.typecodes['Complex']]:
z = np.array([2.2-1.1j], dtype)
x = z[0] # always native-endian
y = x.byteswap()
if x.dtype.byteorder == z.dtype.byteorder:
# little-endian machine
assert_equal(x, np.frombuffer(y.tobytes(), dtype=dtype.newbyteorder()))
else:
# big-endian machine
assert_equal(x, np.frombuffer(y.tobytes(), dtype=dtype))
# double check real and imaginary parts:
assert_equal(x.real, y.real.byteswap())
assert_equal(x.imag, y.imag.byteswap())
def test_structured_arrays_with_objects1(self):
# Ticket #1299
stra = 'aaaa'
strb = 'bbbb'
x = np.array([[(0, stra), (1, strb)]], 'i8,O')
x[x.nonzero()] = x.ravel()[:1]
assert_(x[0, 1] == x[0, 0])
@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_structured_arrays_with_objects2(self):
# Ticket #1299 second test
stra = 'aaaa'
strb = 'bbbb'
numb = sys.getrefcount(strb)
numa = sys.getrefcount(stra)
x = np.array([[(0, stra), (1, strb)]], 'i8,O')
x[x.nonzero()] = x.ravel()[:1]
assert_(sys.getrefcount(strb) == numb)
assert_(sys.getrefcount(stra) == numa + 2)
def test_duplicate_title_and_name(self):
# Ticket #1254
dtspec = [(('a', 'a'), 'i'), ('b', 'i')]
assert_raises(ValueError, np.dtype, dtspec)
def test_signed_integer_division_overflow(self):
# Ticket #1317.
def test_type(t):
min = np.array([np.iinfo(t).min])
min //= -1
with np.errstate(over="ignore"):
for t in (np.int8, np.int16, np.int32, np.int64, int):
test_type(t)
def test_buffer_hashlib(self):
from hashlib import sha256
x = np.array([1, 2, 3], dtype=np.dtype('<i4'))
assert_equal(sha256(x).hexdigest(), '4636993d3e1da4e9d6b8f87b79e8f7c6d018580d52661950eabc3845c5897a4d')
def test_0d_string_scalar(self):
# Bug #1436; the following should succeed
np.asarray('x', '>c')
def test_log1p_compiler_shenanigans(self):
# Check if log1p is behaving on 32 bit intel systems.
assert_(np.isfinite(np.log1p(np.exp2(-53))))
def test_fromiter_comparison(self):
a = np.fromiter(list(range(10)), dtype='b')
b = np.fromiter(list(range(10)), dtype='B')
assert_(np.all(a == np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])))
assert_(np.all(b == np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])))
def test_fromstring_crash(self):
# Ticket #1345: the following should not cause a crash
with assert_warns(DeprecationWarning):
np.fromstring(b'aa, aa, 1.0', sep=',')
def test_ticket_1539(self):
dtypes = [x for x in np.sctypeDict.values()
if (issubclass(x, np.number)
and not issubclass(x, np.timedelta64))]
a = np.array([], np.bool_) # not x[0] because it is unordered
failures = []
for x in dtypes:
b = a.astype(x)
for y in dtypes:
c = a.astype(y)
try:
d = np.dot(b, c)
except TypeError:
failures.append((x, y))
else:
if d != 0:
failures.append((x, y))
if failures:
raise AssertionError("Failures: %r" % failures)
def test_ticket_1538(self):
x = np.finfo(np.float32)
for name in 'eps epsneg max min resolution tiny'.split():
assert_equal(type(getattr(x, name)), np.float32,
err_msg=name)
def test_ticket_1434(self):
# Check that the out= argument in var and std has an effect
data = np.array(((1, 2, 3), (4, 5, 6), (7, 8, 9)))
out = np.zeros((3,))
ret = data.var(axis=1, out=out)
assert_(ret is out)
assert_array_equal(ret, data.var(axis=1))
ret = data.std(axis=1, out=out)
assert_(ret is out)
assert_array_equal(ret, data.std(axis=1))
def test_complex_nan_maximum(self):
cnan = complex(0, np.nan)
assert_equal(np.maximum(1, cnan), cnan)
def test_subclass_int_tuple_assignment(self):
# ticket #1563
class Subclass(np.ndarray):
def __new__(cls, i):
return np.ones((i,)).view(cls)
x = Subclass(5)
x[(0,)] = 2 # shouldn't raise an exception
assert_equal(x[0], 2)
def test_ufunc_no_unnecessary_views(self):
# ticket #1548
class Subclass(np.ndarray):
pass
x = np.array([1, 2, 3]).view(Subclass)
y = np.add(x, x, x)
assert_equal(id(x), id(y))
@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_take_refcount(self):
# ticket #939
a = np.arange(16, dtype=float)
a.shape = (4, 4)
lut = np.ones((5 + 3, 4), float)
rgba = np.empty(shape=a.shape + (4,), dtype=lut.dtype)
c1 = sys.getrefcount(rgba)
try:
lut.take(a, axis=0, mode='clip', out=rgba)
except TypeError:
pass
c2 = sys.getrefcount(rgba)
assert_equal(c1, c2)
def test_fromfile_tofile_seeks(self):
# On Python 3, tofile/fromfile used to get (#1610) the Python
# file handle out of sync
f0 = tempfile.NamedTemporaryFile()
f = f0.file
f.write(np.arange(255, dtype='u1').tobytes())
f.seek(20)
ret = np.fromfile(f, count=4, dtype='u1')
assert_equal(ret, np.array([20, 21, 22, 23], dtype='u1'))
assert_equal(f.tell(), 24)
f.seek(40)
np.array([1, 2, 3], dtype='u1').tofile(f)
assert_equal(f.tell(), 43)
f.seek(40)
data = f.read(3)
assert_equal(data, b"\x01\x02\x03")
f.seek(80)
f.read(4)
data = np.fromfile(f, dtype='u1', count=4)
assert_equal(data, np.array([84, 85, 86, 87], dtype='u1'))
f.close()
def test_complex_scalar_warning(self):
for tp in [np.csingle, np.cdouble, np.clongdouble]:
x = tp(1+2j)
assert_warns(np.ComplexWarning, float, x)
with suppress_warnings() as sup:
sup.filter(np.ComplexWarning)
assert_equal(float(x), float(x.real))
def test_complex_scalar_complex_cast(self):
for tp in [np.csingle, np.cdouble, np.clongdouble]:
x = tp(1+2j)
assert_equal(complex(x), 1+2j)
def test_complex_boolean_cast(self):
# Ticket #2218
for tp in [np.csingle, np.cdouble, np.clongdouble]:
x = np.array([0, 0+0.5j, 0.5+0j], dtype=tp)
assert_equal(x.astype(bool), np.array([0, 1, 1], dtype=bool))
assert_(np.any(x))
assert_(np.all(x[1:]))
def test_uint_int_conversion(self):
x = 2**64 - 1
assert_equal(int(np.uint64(x)), x)
def test_duplicate_field_names_assign(self):
ra = np.fromiter(((i*3, i*2) for i in range(10)), dtype='i8,f8')
ra.dtype.names = ('f1', 'f2')
repr(ra) # should not cause a segmentation fault
assert_raises(ValueError, setattr, ra.dtype, 'names', ('f1', 'f1'))
def test_eq_string_and_object_array(self):
# From e-mail thread "__eq__ with str and object" (Keith Goodman)
a1 = np.array(['a', 'b'], dtype=object)
a2 = np.array(['a', 'c'])
assert_array_equal(a1 == a2, [True, False])
assert_array_equal(a2 == a1, [True, False])
def test_nonzero_byteswap(self):
a = np.array([0x80000000, 0x00000080, 0], dtype=np.uint32)
a.dtype = np.float32
assert_equal(a.nonzero()[0], [1])
a = a.byteswap().newbyteorder()
assert_equal(a.nonzero()[0], [1]) # [0] if nonzero() ignores swap
def test_find_common_type_boolean(self):
# Ticket #1695
with pytest.warns(DeprecationWarning, match="np.find_common_type"):
res = np.find_common_type([], ['?', '?'])
assert res == '?'
def test_empty_mul(self):
a = np.array([1.])
a[1:1] *= 2
assert_equal(a, [1.])
def test_array_side_effect(self):
# The second use of itemsize was throwing an exception because in
# ctors.c, discover_itemsize was calling PyObject_Length without
# checking the return code. This failed to get the length of the
# number 2, and the exception hung around until something checked
# PyErr_Occurred() and returned an error.
assert_equal(np.dtype('S10').itemsize, 10)
np.array([['abc', 2], ['long ', '0123456789']], dtype=np.bytes_)
assert_equal(np.dtype('S10').itemsize, 10)
def test_any_float(self):
# all and any for floats
a = np.array([0.1, 0.9])
assert_(np.any(a))
assert_(np.all(a))
def test_large_float_sum(self):
a = np.arange(10000, dtype='f')
assert_equal(a.sum(dtype='d'), a.astype('d').sum())
def test_ufunc_casting_out(self):
a = np.array(1.0, dtype=np.float32)
b = np.array(1.0, dtype=np.float64)
c = np.array(1.0, dtype=np.float32)
np.add(a, b, out=c)
assert_equal(c, 2.0)
def test_array_scalar_contiguous(self):
# Array scalars are both C and Fortran contiguous
assert_(np.array(1.0).flags.c_contiguous)
assert_(np.array(1.0).flags.f_contiguous)
assert_(np.array(np.float32(1.0)).flags.c_contiguous)
assert_(np.array(np.float32(1.0)).flags.f_contiguous)
def test_squeeze_contiguous(self):
# Similar to GitHub issue #387
a = np.zeros((1, 2)).squeeze()
b = np.zeros((2, 2, 2), order='F')[:, :, ::2].squeeze()
assert_(a.flags.c_contiguous)
assert_(a.flags.f_contiguous)
assert_(b.flags.f_contiguous)
def test_squeeze_axis_handling(self):
# Issue #10779
# Ensure proper handling of objects
# that don't support axis specification
# when squeezing
class OldSqueeze(np.ndarray):
def __new__(cls,
input_array):
obj = np.asarray(input_array).view(cls)
return obj
# it is perfectly reasonable that prior
# to numpy version 1.7.0 a subclass of ndarray
# might have been created that did not expect
# squeeze to have an axis argument
# NOTE: this example is somewhat artificial;
# it is designed to simulate an old API
# expectation to guard against regression
def squeeze(self):
return super().squeeze()
oldsqueeze = OldSqueeze(np.array([[1],[2],[3]]))
# if no axis argument is specified the old API
# expectation should give the correct result
assert_equal(np.squeeze(oldsqueeze),
np.array([1,2,3]))
# likewise, axis=None should work perfectly well
# with the old API expectation
assert_equal(np.squeeze(oldsqueeze, axis=None),
np.array([1,2,3]))
# however, specification of any particular axis
# should raise a TypeError in the context of the
# old API specification, even when using a valid
# axis specification like 1 for this array
with assert_raises(TypeError):
# this would silently succeed for array
# subclasses / objects that did not support
# squeeze axis argument handling before fixing
# Issue #10779
np.squeeze(oldsqueeze, axis=1)
# check for the same behavior when using an invalid
# axis specification -- in this case axis=0 does not
# have size 1, but the priority should be to raise
# a TypeError for the axis argument and NOT a
# ValueError for squeezing a non-empty dimension
with assert_raises(TypeError):
np.squeeze(oldsqueeze, axis=0)
# the new API knows how to handle the axis
# argument and will return a ValueError if
# attempting to squeeze an axis that is not
# of length 1
with assert_raises(ValueError):
np.squeeze(np.array([[1],[2],[3]]), axis=0)
def test_reduce_contiguous(self):
# GitHub issue #387
a = np.add.reduce(np.zeros((2, 1, 2)), (0, 1))
b = np.add.reduce(np.zeros((2, 1, 2)), 1)
assert_(a.flags.c_contiguous)
assert_(a.flags.f_contiguous)
assert_(b.flags.c_contiguous)
@pytest.mark.skipif(IS_PYSTON, reason="Pyston disables recursion checking")
def test_object_array_self_reference(self):
# Object arrays with references to themselves can cause problems
a = np.array(0, dtype=object)
a[()] = a
assert_raises(RecursionError, int, a)
assert_raises(RecursionError, float, a)
a[()] = None
@pytest.mark.skipif(IS_PYSTON, reason="Pyston disables recursion checking")
def test_object_array_circular_reference(self):
# Test the same for a circular reference.
a = np.array(0, dtype=object)
b = np.array(0, dtype=object)
a[()] = b
b[()] = a
assert_raises(RecursionError, int, a)
# NumPy has no tp_traverse currently, so circular references
# cannot be detected. So resolve it:
a[()] = None
# This was causing a to become like the above
a = np.array(0, dtype=object)
a[...] += 1
assert_equal(a, 1)
def test_object_array_nested(self):
# but is fine with a reference to a different array
a = np.array(0, dtype=object)
b = np.array(0, dtype=object)
a[()] = b
assert_equal(int(a), int(0))
assert_equal(float(a), float(0))
def test_object_array_self_copy(self):
# An object array being copied into itself DECREF'ed before INCREF'ing
# causing segmentation faults (gh-3787)
a = np.array(object(), dtype=object)
np.copyto(a, a)
if HAS_REFCOUNT:
assert_(sys.getrefcount(a[()]) == 2)
a[()].__class__ # will segfault if object was deleted
def test_zerosize_accumulate(self):
"Ticket #1733"
x = np.array([[42, 0]], dtype=np.uint32)
assert_equal(np.add.accumulate(x[:-1, 0]), [])
def test_objectarray_setfield(self):
# Setfield should not overwrite Object fields with non-Object data
x = np.array([1, 2, 3], dtype=object)
assert_raises(TypeError, x.setfield, 4, np.int32, 0)
def test_setting_rank0_string(self):
"Ticket #1736"
s1 = b"hello1"
s2 = b"hello2"
a = np.zeros((), dtype="S10")
a[()] = s1
assert_equal(a, np.array(s1))
a[()] = np.array(s2)
assert_equal(a, np.array(s2))
a = np.zeros((), dtype='f4')
a[()] = 3
assert_equal(a, np.array(3))
a[()] = np.array(4)
assert_equal(a, np.array(4))
def test_string_astype(self):
"Ticket #1748"
s1 = b'black'
s2 = b'white'
s3 = b'other'
a = np.array([[s1], [s2], [s3]])
assert_equal(a.dtype, np.dtype('S5'))
b = a.astype(np.dtype('S0'))
assert_equal(b.dtype, np.dtype('S5'))
def test_ticket_1756(self):
# Ticket #1756
s = b'0123456789abcdef'
a = np.array([s]*5)
for i in range(1, 17):
a1 = np.array(a, "|S%d" % i)
a2 = np.array([s[:i]]*5)
assert_equal(a1, a2)
def test_fields_strides(self):
"gh-2355"
r = np.frombuffer(b'abcdefghijklmnop'*4*3, dtype='i4,(2,3)u2')
assert_equal(r[0:3:2]['f1'], r['f1'][0:3:2])
assert_equal(r[0:3:2]['f1'][0], r[0:3:2][0]['f1'])
assert_equal(r[0:3:2]['f1'][0][()], r[0:3:2][0]['f1'][()])
assert_equal(r[0:3:2]['f1'][0].strides, r[0:3:2][0]['f1'].strides)
def test_alignment_update(self):
# Check that alignment flag is updated on stride setting
a = np.arange(10)
assert_(a.flags.aligned)
a.strides = 3
assert_(not a.flags.aligned)
def test_ticket_1770(self):
"Should not segfault on python 3k"
import numpy as np
try:
a = np.zeros((1,), dtype=[('f1', 'f')])
a['f1'] = 1
a['f2'] = 1
except ValueError:
pass
except Exception:
raise AssertionError
def test_ticket_1608(self):
"x.flat shouldn't modify data"
x = np.array([[1, 2], [3, 4]]).T
np.array(x.flat)
assert_equal(x, [[1, 3], [2, 4]])
def test_pickle_string_overwrite(self):
import re
data = np.array([1], dtype='b')
blob = pickle.dumps(data, protocol=1)
data = pickle.loads(blob)
# Check that loads does not clobber interned strings
s = re.sub("a(.)", "\x01\\1", "a_")
assert_equal(s[0], "\x01")
data[0] = 0x6a
s = re.sub("a(.)", "\x01\\1", "a_")
assert_equal(s[0], "\x01")
def test_pickle_bytes_overwrite(self):
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
data = np.array([1], dtype='b')
data = pickle.loads(pickle.dumps(data, protocol=proto))
data[0] = 0x7d
bytestring = "\x01 ".encode('ascii')
assert_equal(bytestring[0:1], '\x01'.encode('ascii'))
def test_pickle_py2_array_latin1_hack(self):
# Check that unpickling hacks in Py3 that support
# encoding='latin1' work correctly.
# Python2 output for pickle.dumps(numpy.array([129], dtype='b'))
data = (b"cnumpy.core.multiarray\n_reconstruct\np0\n(cnumpy\nndarray\np1\n(I0\n"
b"tp2\nS'b'\np3\ntp4\nRp5\n(I1\n(I1\ntp6\ncnumpy\ndtype\np7\n(S'i1'\np8\n"
b"I0\nI1\ntp9\nRp10\n(I3\nS'|'\np11\nNNNI-1\nI-1\nI0\ntp12\nbI00\nS'\\x81'\n"
b"p13\ntp14\nb.")
# This should work:
result = pickle.loads(data, encoding='latin1')
assert_array_equal(result, np.array([129]).astype('b'))
# Should not segfault:
assert_raises(Exception, pickle.loads, data, encoding='koi8-r')
def test_pickle_py2_scalar_latin1_hack(self):
# Check that scalar unpickling hack in Py3 that supports
# encoding='latin1' work correctly.
# Python2 output for pickle.dumps(...)
datas = [
# (original, python2_pickle, koi8r_validity)
(np.str_('\u6bd2'),
(b"cnumpy.core.multiarray\nscalar\np0\n(cnumpy\ndtype\np1\n"
b"(S'U1'\np2\nI0\nI1\ntp3\nRp4\n(I3\nS'<'\np5\nNNNI4\nI4\nI0\n"
b"tp6\nbS'\\xd2k\\x00\\x00'\np7\ntp8\nRp9\n."),
'invalid'),
(np.float64(9e123),
(b"cnumpy.core.multiarray\nscalar\np0\n(cnumpy\ndtype\np1\n(S'f8'\n"
b"p2\nI0\nI1\ntp3\nRp4\n(I3\nS'<'\np5\nNNNI-1\nI-1\nI0\ntp6\n"
b"bS'O\\x81\\xb7Z\\xaa:\\xabY'\np7\ntp8\nRp9\n."),
'invalid'),
(np.bytes_(b'\x9c'), # different 8-bit code point in KOI8-R vs latin1
(b"cnumpy.core.multiarray\nscalar\np0\n(cnumpy\ndtype\np1\n(S'S1'\np2\n"
b"I0\nI1\ntp3\nRp4\n(I3\nS'|'\np5\nNNNI1\nI1\nI0\ntp6\nbS'\\x9c'\np7\n"
b"tp8\nRp9\n."),
'different'),
]
for original, data, koi8r_validity in datas:
result = pickle.loads(data, encoding='latin1')
assert_equal(result, original)
# Decoding under non-latin1 encoding (e.g.) KOI8-R can
# produce bad results, but should not segfault.
if koi8r_validity == 'different':
# Unicode code points happen to lie within latin1,
# but are different in koi8-r, resulting to silent
# bogus results
result = pickle.loads(data, encoding='koi8-r')
assert_(result != original)
elif koi8r_validity == 'invalid':
# Unicode code points outside latin1, so results
# to an encoding exception
assert_raises(ValueError, pickle.loads, data, encoding='koi8-r')
else:
raise ValueError(koi8r_validity)
def test_structured_type_to_object(self):
a_rec = np.array([(0, 1), (3, 2)], dtype='i4,i8')
a_obj = np.empty((2,), dtype=object)
a_obj[0] = (0, 1)
a_obj[1] = (3, 2)
# astype records -> object
assert_equal(a_rec.astype(object), a_obj)
# '=' records -> object
b = np.empty_like(a_obj)
b[...] = a_rec
assert_equal(b, a_obj)
# '=' object -> records
b = np.empty_like(a_rec)
b[...] = a_obj
assert_equal(b, a_rec)
def test_assign_obj_listoflists(self):
# Ticket # 1870
# The inner list should get assigned to the object elements
a = np.zeros(4, dtype=object)
b = a.copy()
a[0] = [1]
a[1] = [2]
a[2] = [3]
a[3] = [4]
b[...] = [[1], [2], [3], [4]]
assert_equal(a, b)
# The first dimension should get broadcast
a = np.zeros((2, 2), dtype=object)
a[...] = [[1, 2]]
assert_equal(a, [[1, 2], [1, 2]])
@pytest.mark.slow_pypy
def test_memoryleak(self):
# Ticket #1917 - ensure that array data doesn't leak
for i in range(1000):
# 100MB times 1000 would give 100GB of memory usage if it leaks
a = np.empty((100000000,), dtype='i1')
del a
@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_ufunc_reduce_memoryleak(self):
a = np.arange(6)
acnt = sys.getrefcount(a)
np.add.reduce(a)
assert_equal(sys.getrefcount(a), acnt)
def test_search_sorted_invalid_arguments(self):
# Ticket #2021, should not segfault.
x = np.arange(0, 4, dtype='datetime64[D]')
assert_raises(TypeError, x.searchsorted, 1)
def test_string_truncation(self):
# Ticket #1990 - Data can be truncated in creation of an array from a
# mixed sequence of numeric values and strings (gh-2583)
for val in [True, 1234, 123.4, complex(1, 234)]:
for tostr, dtype in [(asunicode, "U"), (asbytes, "S")]:
b = np.array([val, tostr('xx')], dtype=dtype)
assert_equal(tostr(b[0]), tostr(val))
b = np.array([tostr('xx'), val], dtype=dtype)
assert_equal(tostr(b[1]), tostr(val))
# test also with longer strings
b = np.array([val, tostr('xxxxxxxxxx')], dtype=dtype)
assert_equal(tostr(b[0]), tostr(val))
b = np.array([tostr('xxxxxxxxxx'), val], dtype=dtype)
assert_equal(tostr(b[1]), tostr(val))
def test_string_truncation_ucs2(self):
# Ticket #2081. Python compiled with two byte unicode
# can lead to truncation if itemsize is not properly
# adjusted for NumPy's four byte unicode.
a = np.array(['abcd'])
assert_equal(a.dtype.itemsize, 16)
def test_unique_stable(self):
# Ticket #2063 must always choose stable sort for argsort to
# get consistent results
v = np.array(([0]*5 + [1]*6 + [2]*6)*4)
res = np.unique(v, return_index=True)
tgt = (np.array([0, 1, 2]), np.array([ 0, 5, 11]))
assert_equal(res, tgt)
def test_unicode_alloc_dealloc_match(self):
# Ticket #1578, the mismatch only showed up when running
# python-debug for python versions >= 2.7, and then as
# a core dump and error message.
a = np.array(['abc'], dtype=np.str_)[0]
del a
def test_refcount_error_in_clip(self):
# Ticket #1588
a = np.zeros((2,), dtype='>i2').clip(min=0)
x = a + a
# This used to segfault:
y = str(x)
# Check the final string:
assert_(y == "[0 0]")
def test_searchsorted_wrong_dtype(self):
# Ticket #2189, it used to segfault, so we check that it raises the
# proper exception.
a = np.array([('a', 1)], dtype='S1, int')
assert_raises(TypeError, np.searchsorted, a, 1.2)
# Ticket #2066, similar problem:
dtype = np.format_parser(['i4', 'i4'], [], [])
a = np.recarray((2,), dtype)
a[...] = [(1, 2), (3, 4)]
assert_raises(TypeError, np.searchsorted, a, 1)
def test_complex64_alignment(self):
# Issue gh-2668 (trac 2076), segfault on sparc due to misalignment
dtt = np.complex64
arr = np.arange(10, dtype=dtt)
# 2D array
arr2 = np.reshape(arr, (2, 5))
# Fortran write followed by (C or F) read caused bus error
data_str = arr2.tobytes('F')
data_back = np.ndarray(arr2.shape,
arr2.dtype,
buffer=data_str,
order='F')
assert_array_equal(arr2, data_back)
def test_structured_count_nonzero(self):
arr = np.array([0, 1]).astype('i4, (2)i4')[:1]
count = np.count_nonzero(arr)
assert_equal(count, 0)
def test_copymodule_preserves_f_contiguity(self):
a = np.empty((2, 2), order='F')
b = copy.copy(a)
c = copy.deepcopy(a)
assert_(b.flags.fortran)
assert_(b.flags.f_contiguous)
assert_(c.flags.fortran)
assert_(c.flags.f_contiguous)
def test_fortran_order_buffer(self):
import numpy as np
a = np.array([['Hello', 'Foob']], dtype='U5', order='F')
arr = np.ndarray(shape=[1, 2, 5], dtype='U1', buffer=a)
arr2 = np.array([[['H', 'e', 'l', 'l', 'o'],
['F', 'o', 'o', 'b', '']]])
assert_array_equal(arr, arr2)
def test_assign_from_sequence_error(self):
# Ticket #4024.
arr = np.array([1, 2, 3])
assert_raises(ValueError, arr.__setitem__, slice(None), [9, 9])
arr.__setitem__(slice(None), [9])
assert_equal(arr, [9, 9, 9])
def test_format_on_flex_array_element(self):
# Ticket #4369.
dt = np.dtype([('date', '<M8[D]'), ('val', '<f8')])
arr = np.array([('2000-01-01', 1)], dt)
formatted = '{0}'.format(arr[0])
assert_equal(formatted, str(arr[0]))
def test_deepcopy_on_0d_array(self):
# Ticket #3311.
arr = np.array(3)
arr_cp = copy.deepcopy(arr)
assert_equal(arr, arr_cp)
assert_equal(arr.shape, arr_cp.shape)
assert_equal(int(arr), int(arr_cp))
assert_(arr is not arr_cp)
assert_(isinstance(arr_cp, type(arr)))
def test_deepcopy_F_order_object_array(self):
# Ticket #6456.
a = {'a': 1}
b = {'b': 2}
arr = np.array([[a, b], [a, b]], order='F')
arr_cp = copy.deepcopy(arr)
assert_equal(arr, arr_cp)
assert_(arr is not arr_cp)
# Ensure that we have actually copied the item.
assert_(arr[0, 1] is not arr_cp[1, 1])
# Ensure we are allowed to have references to the same object.
assert_(arr[0, 1] is arr[1, 1])
# Check the references hold for the copied objects.
assert_(arr_cp[0, 1] is arr_cp[1, 1])
def test_deepcopy_empty_object_array(self):
# Ticket #8536.
# Deepcopy should succeed
a = np.array([], dtype=object)
b = copy.deepcopy(a)
assert_(a.shape == b.shape)
def test_bool_subscript_crash(self):
# gh-4494
c = np.rec.array([(1, 2, 3), (4, 5, 6)])
masked = c[np.array([True, False])]
base = masked.base
del masked, c
base.dtype
def test_richcompare_crash(self):
# gh-4613
import operator as op
# dummy class where __array__ throws exception
class Foo:
__array_priority__ = 1002
def __array__(self, *args, **kwargs):
raise Exception()
rhs = Foo()
lhs = np.array(1)
for f in [op.lt, op.le, op.gt, op.ge]:
assert_raises(TypeError, f, lhs, rhs)
assert_(not op.eq(lhs, rhs))
assert_(op.ne(lhs, rhs))
def test_richcompare_scalar_and_subclass(self):
# gh-4709
class Foo(np.ndarray):
def __eq__(self, other):
return "OK"
x = np.array([1, 2, 3]).view(Foo)
assert_equal(10 == x, "OK")
assert_equal(np.int32(10) == x, "OK")
assert_equal(np.array([10]) == x, "OK")
def test_pickle_empty_string(self):
# gh-3926
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
test_string = np.bytes_('')
assert_equal(pickle.loads(
pickle.dumps(test_string, protocol=proto)), test_string)
def test_frompyfunc_many_args(self):
# gh-5672
def passer(*args):
pass
assert_raises(ValueError, np.frompyfunc, passer, 32, 1)
def test_repeat_broadcasting(self):
# gh-5743
a = np.arange(60).reshape(3, 4, 5)
for axis in chain(range(-a.ndim, a.ndim), [None]):
assert_equal(a.repeat(2, axis=axis), a.repeat([2], axis=axis))
def test_frompyfunc_nout_0(self):
# gh-2014
def f(x):
x[0], x[-1] = x[-1], x[0]
uf = np.frompyfunc(f, 1, 0)
a = np.array([[1, 2, 3], [4, 5], [6, 7, 8, 9]], dtype=object)
assert_equal(uf(a), ())
expected = np.array([[3, 2, 1], [5, 4], [9, 7, 8, 6]], dtype=object)
assert_array_equal(a, expected)
@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_leak_in_structured_dtype_comparison(self):
# gh-6250
recordtype = np.dtype([('a', np.float64),
('b', np.int32),
('d', (str, 5))])
# Simple case
a = np.zeros(2, dtype=recordtype)
for i in range(100):
a == a
assert_(sys.getrefcount(a) < 10)
# The case in the bug report.
before = sys.getrefcount(a)
u, v = a[0], a[1]
u == v
del u, v
gc.collect()
after = sys.getrefcount(a)
assert_equal(before, after)
def test_empty_percentile(self):
# gh-6530 / gh-6553
assert_array_equal(np.percentile(np.arange(10), []), np.array([]))
def test_void_compare_segfault(self):
# gh-6922. The following should not segfault
a = np.ones(3, dtype=[('object', 'O'), ('int', '<i2')])
a.sort()
def test_reshape_size_overflow(self):
# gh-7455
a = np.ones(20)[::2]
if np.dtype(np.intp).itemsize == 8:
# 64 bit. The following are the prime factors of 2**63 + 5,
# plus a leading 2, so when multiplied together as int64,
# the result overflows to a total size of 10.
new_shape = (2, 13, 419, 691, 823, 2977518503)
else:
# 32 bit. The following are the prime factors of 2**31 + 5,
# plus a leading 2, so when multiplied together as int32,
# the result overflows to a total size of 10.
new_shape = (2, 7, 7, 43826197)
assert_raises(ValueError, a.reshape, new_shape)
@pytest.mark.skipif(IS_PYPY and sys.implementation.version <= (7, 3, 8),
reason="PyPy bug in error formatting")
def test_invalid_structured_dtypes(self):
# gh-2865
# mapping python objects to other dtypes
assert_raises(ValueError, np.dtype, ('O', [('name', 'i8')]))
assert_raises(ValueError, np.dtype, ('i8', [('name', 'O')]))
assert_raises(ValueError, np.dtype,
('i8', [('name', [('name', 'O')])]))
assert_raises(ValueError, np.dtype, ([('a', 'i4'), ('b', 'i4')], 'O'))
assert_raises(ValueError, np.dtype, ('i8', 'O'))
# wrong number/type of tuple elements in dict
assert_raises(ValueError, np.dtype,
('i', {'name': ('i', 0, 'title', 'oops')}))
assert_raises(ValueError, np.dtype,
('i', {'name': ('i', 'wrongtype', 'title')}))
# disallowed as of 1.13
assert_raises(ValueError, np.dtype,
([('a', 'O'), ('b', 'O')], [('c', 'O'), ('d', 'O')]))
# allowed as a special case due to existing use, see gh-2798
a = np.ones(1, dtype=('O', [('name', 'O')]))
assert_equal(a[0], 1)
# In particular, the above union dtype (and union dtypes in general)
# should mainly behave like the main (object) dtype:
assert a[0] is a.item()
assert type(a[0]) is int
def test_correct_hash_dict(self):
# gh-8887 - __hash__ would be None despite tp_hash being set
all_types = set(np.sctypeDict.values()) - {np.void}
for t in all_types:
val = t()
try:
hash(val)
except TypeError as e:
assert_equal(t.__hash__, None)
else:
assert_(t.__hash__ != None)
def test_scalar_copy(self):
scalar_types = set(np.sctypeDict.values())
values = {
np.void: b"a",
np.bytes_: b"a",
np.str_: "a",
np.datetime64: "2017-08-25",
}
for sctype in scalar_types:
item = sctype(values.get(sctype, 1))
item2 = copy.copy(item)
assert_equal(item, item2)
def test_void_item_memview(self):
va = np.zeros(10, 'V4')
x = va[:1].item()
va[0] = b'\xff\xff\xff\xff'
del va
assert_equal(x, b'\x00\x00\x00\x00')
def test_void_getitem(self):
# Test fix for gh-11668.
assert_(np.array([b'a'], 'V1').astype('O') == b'a')
assert_(np.array([b'ab'], 'V2').astype('O') == b'ab')
assert_(np.array([b'abc'], 'V3').astype('O') == b'abc')
assert_(np.array([b'abcd'], 'V4').astype('O') == b'abcd')
def test_structarray_title(self):
# The following used to segfault on pypy, due to NPY_TITLE_KEY
# not working properly and resulting to double-decref of the
# structured array field items:
# See: https://bitbucket.org/pypy/pypy/issues/2789
for j in range(5):
structure = np.array([1], dtype=[(('x', 'X'), np.object_)])
structure[0]['x'] = np.array([2])
gc.collect()
def test_dtype_scalar_squeeze(self):
# gh-11384
values = {
'S': b"a",
'M': "2018-06-20",
}
for ch in np.typecodes['All']:
if ch in 'O':
continue
sctype = np.dtype(ch).type
scvalue = sctype(values.get(ch, 3))
for axis in [None, ()]:
squeezed = scvalue.squeeze(axis=axis)
assert_equal(squeezed, scvalue)
assert_equal(type(squeezed), type(scvalue))
def test_field_access_by_title(self):
# gh-11507
s = 'Some long field name'
if HAS_REFCOUNT:
base = sys.getrefcount(s)
t = np.dtype([((s, 'f1'), np.float64)])
data = np.zeros(10, t)
for i in range(10):
str(data[['f1']])
if HAS_REFCOUNT:
assert_(base <= sys.getrefcount(s))
@pytest.mark.parametrize('val', [
# arrays and scalars
np.ones((10, 10), dtype='int32'),
np.uint64(10),
])
@pytest.mark.parametrize('protocol',
range(2, pickle.HIGHEST_PROTOCOL + 1)
)
def test_pickle_module(self, protocol, val):
# gh-12837
s = pickle.dumps(val, protocol)
assert b'_multiarray_umath' not in s
if protocol == 5 and len(val.shape) > 0:
# unpickling ndarray goes through _frombuffer for protocol 5
assert b'numpy.core.numeric' in s
else:
assert b'numpy.core.multiarray' in s
def test_object_casting_errors(self):
# gh-11993 update to ValueError (see gh-16909), since strings can in
# principle be converted to complex, but this string cannot.
arr = np.array(['AAAAA', 18465886.0, 18465886.0], dtype=object)
assert_raises(ValueError, arr.astype, 'c8')
def test_eff1d_casting(self):
# gh-12711
x = np.array([1, 2, 4, 7, 0], dtype=np.int16)
res = np.ediff1d(x, to_begin=-99, to_end=np.array([88, 99]))
assert_equal(res, [-99, 1, 2, 3, -7, 88, 99])
# The use of safe casting means, that 1<<20 is cast unsafely, an
# error may be better, but currently there is no mechanism for it.
res = np.ediff1d(x, to_begin=(1<<20), to_end=(1<<20))
assert_equal(res, [0, 1, 2, 3, -7, 0])
def test_pickle_datetime64_array(self):
# gh-12745 (would fail with pickle5 installed)
d = np.datetime64('2015-07-04 12:59:59.50', 'ns')
arr = np.array([d])
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
dumped = pickle.dumps(arr, protocol=proto)
assert_equal(pickle.loads(dumped), arr)
def test_bad_array_interface(self):
class T:
__array_interface__ = {}
with assert_raises(ValueError):
np.array([T()])
def test_2d__array__shape(self):
class T:
def __array__(self):
return np.ndarray(shape=(0,0))
# Make sure __array__ is used instead of Sequence methods.
def __iter__(self):
return iter([])
def __getitem__(self, idx):
raise AssertionError("__getitem__ was called")
def __len__(self):
return 0
t = T()
# gh-13659, would raise in broadcasting [x=t for x in result]
arr = np.array([t])
assert arr.shape == (1, 0, 0)
@pytest.mark.skipif(sys.maxsize < 2 ** 31 + 1, reason='overflows 32-bit python')
def test_to_ctypes(self):
#gh-14214
arr = np.zeros((2 ** 31 + 1,), 'b')
assert arr.size * arr.itemsize > 2 ** 31
c_arr = np.ctypeslib.as_ctypes(arr)
assert_equal(c_arr._length_, arr.size)
def test_complex_conversion_error(self):
# gh-17068
with pytest.raises(TypeError, match=r"Unable to convert dtype.*"):
complex(np.array("now", np.datetime64))
def test__array_interface__descr(self):
# gh-17068
dt = np.dtype(dict(names=['a', 'b'],
offsets=[0, 0],
formats=[np.int64, np.int64]))
descr = np.array((1, 1), dtype=dt).__array_interface__['descr']
assert descr == [('', '|V8')] # instead of [(b'', '|V8')]
@pytest.mark.skipif(sys.maxsize < 2 ** 31 + 1, reason='overflows 32-bit python')
@requires_memory(free_bytes=9e9)
def test_dot_big_stride(self):
# gh-17111
# blas stride = stride//itemsize > int32 max
int32_max = np.iinfo(np.int32).max
n = int32_max + 3
a = np.empty([n], dtype=np.float32)
b = a[::n-1]
b[...] = 1
assert b.strides[0] > int32_max * b.dtype.itemsize
assert np.dot(b, b) == 2.0
def test_frompyfunc_name(self):
# name conversion was failing for python 3 strings
# resulting in the default '?' name. Also test utf-8
# encoding using non-ascii name.
def cassé(x):
return x
f = np.frompyfunc(cassé, 1, 1)
assert str(f) == "<ufunc 'cassé (vectorized)'>"
@pytest.mark.parametrize("operation", [
'add', 'subtract', 'multiply', 'floor_divide',
'conjugate', 'fmod', 'square', 'reciprocal',
'power', 'absolute', 'negative', 'positive',
'greater', 'greater_equal', 'less',
'less_equal', 'equal', 'not_equal', 'logical_and',
'logical_not', 'logical_or', 'bitwise_and', 'bitwise_or',
'bitwise_xor', 'invert', 'left_shift', 'right_shift',
'gcd', 'lcm'
]
)
@pytest.mark.parametrize("order", [
('b->', 'B->'),
('h->', 'H->'),
('i->', 'I->'),
('l->', 'L->'),
('q->', 'Q->'),
]
)
def test_ufunc_order(self, operation, order):
# gh-18075
# Ensure signed types before unsigned
def get_idx(string, str_lst):
for i, s in enumerate(str_lst):
if string in s:
return i
raise ValueError(f"{string} not in list")
types = getattr(np, operation).types
assert get_idx(order[0], types) < get_idx(order[1], types), (
f"Unexpected types order of ufunc in {operation}"
f"for {order}. Possible fix: Use signed before unsigned"
"in generate_umath.py")
def test_nonbool_logical(self):
# gh-22845
# create two arrays with bit patterns that do not overlap.
# needs to be large enough to test both SIMD and scalar paths
size = 100
a = np.frombuffer(b'\x01' * size, dtype=np.bool_)
b = np.frombuffer(b'\x80' * size, dtype=np.bool_)
expected = np.ones(size, dtype=np.bool_)
assert_array_equal(np.logical_and(a, b), expected)
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